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GenBank accessions used in the Fern Tree of Life (FTOL), long format

accessions_long.Rd

One row per accession.

Usage

accessions_long

Format

A tibble (data frame) with 14965 rows and 8 columns.

species

Species name; matches names of tips in tree

locus

Name of locus (gene or intergenic spacer region)

accession

GenBank accession number

seq_len

Sequence length (bp), excluding any missing or ambiguous bases

sci_name

Scientific name used in FTOL

ncbi_name

Scientific name used in the NCBI taxonomic database

ncbi_taxid

NCBI taxonomy database unique identifier

outgroup

Logical; TRUE for outgroup taxa, FALSE for ingroup taxa (ferns)

Details

For details on methods used to infer the tree, see Nitta et al. 2022.

References

Nitta JH, Schuettpelz E, Ramírez-Barahona S, Iwasaki W. (2022) An open and continuously updated fern tree of life. https://doi.org/10.3389/fpls.2022.909768