Package index • ftolr

DNA sequences

ft_seqs(): Load the DNA sequences used to build the Fern Tree of Life (FTOL)

Phylogeny

ft_tree(): Load the Fern Tree of Life (FTOL)

Versioning

ft_data_ver(): Current Fern Tree of Life (FTOL) version and related metadata

Data

Datasets included in this package

Accessions

accessions_long: GenBank accessions used in the Fern Tree of Life (FTOL), long format

accessions_wide: GenBank accessions used in the Fern Tree of Life (FTOL), wide format

Alignments

plastome_alignment: Aligned plastome DNA sequences used to build Fern Tree of Life (FTOL)

plastome_parts: Start and end positions of loci in plastome DNA sequence alignment

sanger_alignment: Aligned (mostly) Sanger DNA sequences used to build Fern Tree of Life (FTOL)

sanger_parts: Start and end positions of loci in Sanger DNA sequence alignment

Fossils

con_fossils ml_fossils: Fossil calibration points used for dating Fern Tree of Life (FTOL)

Taxonomy

ftol_ferns: Fern Tree of Life (FTOL) fern species

ftol_match_results: Fern Tree of Life (FTOL) taxonomic name matching results

ftol_taxonomy: Fern Tree of Life (FTOL) taxonomic data

Trees

backbone_tree: Fern Tree of Life (FTOL) backbone phylogeny

ftol_con_dated_tree: Fern Tree of Life (FTOL) dated consensus phylogeny

ftol_con_tree: Fern Tree of Life (FTOL) consensus phylogeny

ftol_ml_dated_tree: Fern Tree of Life (FTOL) dated maximum-likelihood phylogeny

ftol_ml_tree: Fern Tree of Life (FTOL) maximum-likelihood phylogeny