GenBank accessions used in the Fern Tree of Life (FTOL), wide format
accessions_wide.RdOne row per species.
Format
A tibble (data frame) with 5615 rows and 13 columns.
- species
Species name; matches names of tips in tree
- atpA
GenBank accession number for atpA
- atpB
GenBank accession number for atpB
- matK
GenBank accession number for matK
- rbcL
GenBank accession number for rbcL
- rps4
GenBank accession number for rps4
- rps4-trnS
GenBank accession number for rps4-trnS
- trnL-trnF
GenBank accession number for trnL-trnF
- plastome
GenBank accession number for plastomes
- join_by
Method used to join loci
- specimen_voucher
Specimen voucher
- publication
Publication
- outgroup
Logical; TRUE for outgroup taxa, FALSE for ingroup taxa (ferns)
Details
join_by only provided for Sanger (non-plastome) sequences.
specimen_voucher and publication only provided for Sanger
(non-plastome) sequences, and only if these were the same across all loci.
specimen_voucher has been converted to lower case, alpha-numeric
characters only to account for orthographic variation in GenBank data.
For details on methods used to infer the tree, see Nitta et al. 2022.