Fern Tree of Life (FTOL) taxonomic name matching results

Results of taxonomic name matching and resolution for species included in FTOL. Original names from the NCBI taxonomic database (https://www.ncbi.nlm.nih.gov/taxonomy) were matched to those in pteridocat (https://github.com/fernphy/pteridocat), and synonyms resolved to their accepted names in pteridocat. For compact printing, it is recommended to use the tibble library (library(tibble)).

Usage

ftol_match_results

Format

A tibble (data frame) with 6476 rows and 7 columns.

query

Queried taxonomic name from NCBI

resolved_name

Resolved name used in FTOL

matched_name

Name matching query in pteridocat

resolved_status

Taxonomic status of resolved name

matched_status

Taxonomic status of matched name

match_type

Type of match assigned by taxontools

taxid

NCBI taxonomic ID

References

Nitta JH, Schuettpelz E, Ramírez-Barahona S, Iwasaki W. (2022) An open and continuously updated fern tree of life. https://doi.org/10.3389/fpls.2022.909768

Pteridophyte Phylogeny Group I (2016) A community-derived classification for extant lycophytes and ferns. Journal of Systematics and Evolution 54:563–603. https://doi.org/10.1111/jse.12229