Start and end positions of loci in plastome DNA sequence alignment

These data can be used to extract portions of the plastome DNA sequence alignment (plastome_alignment) corresponding to individual loci.

Usage

plastome_parts

Format

A tibble (data frame) with 79 rows and 3 columns.

locus

Name of locus (gene or intergenic spacer region)

start

Start position (column number) of locus in concatenated DNA alignment

end

End position (column number) of locus in concatenated DNA alignment

Details

For details on methods used to assemble alignment, see Nitta et al. 2022.

References

Nitta JH, Schuettpelz E, Ramírez-Barahona S, Iwasaki W. (2022) An open and continuously updated fern tree of life. https://doi.org/10.3389/fpls.2022.909768